CimmitisH538-4 Coccidioides immitis H538.4

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, DS016985:378608-391450

MATPredictFungiDBCOX13 (flanking_conserved) DS016985:378608-379303 - identity 100.0COX13APN2 (flanking_conserved) DS016985:379931-381756 + identity 100.0APN2MAT1-1-4 (core_MAT) DS016985:382539-383743 + identity 99.4MAT1-1-4MAT1-1-1 (core_MAT) DS016985:384173-385395 + identity 98.5MAT1-1-1SLA2 (flanking_conserved) DS016985:387518-391450 - identity 100.0SLA2CIHG_02232 373546-374535 +: unspecified productCIHG_02232CIHG_02233 376506-376820 -: unspecified productCIHG_02233CIHG_02234 377195-377661 +: DNA damage-responsive protein 48 [Source:UniProtKB/TrEMBL;Acc:A0A0J8RKH7]CIHG_02234CIHG_02235 378608-379303 -: Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A0J8RH01]CIHG_02235CIHG_02236 379931-381756 +: DNA-(apurinic or apyrimidinic site) lyase 2CIHG_02236CIHG_02237 382539-383743 +: unspecified productCIHG_02237CIHG_02238 384173-385395 +: mating-type protein MAT-1CIHG_02238CIHG_02239 385896-386343 -: unspecified productCIHG_02239CIHG_02240 387132-391646 -: huntingtin-interacting protein 1CIHG_02240CIHG_02241 392022-394765 -: SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0J8RIH2]CIHG_02241CIHG_02242 394848-395451 +: unspecified productCIHG_02242CIHG_02243 395791-401374 +: Mediator of RNA polymerase II transcription subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A0J8UBH3]CIHG_02243374 kb376 kb378 kb380 kb382 kb384 kb386 kb388 kb390 kb392 kb394 kb396 kbDS016985
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved378608-379303 -annotatedCIHG_02235Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A0J8RH01]CIHG_02235 covers 100% of it on the same strand
APN2flanking_conserved379931-381756 +annotatedCIHG_02236DNA-(apurinic or apyrimidinic site) lyase 2CIHG_02236 covers 100% of it on the same strand
MAT1-1-4core_MAT382539-383743 +annotatedCIHG_02237unspecified productCIHG_02237 covers 100% of it on the same strand
MAT1-1-1core_MAT384173-385395 +annotatedCIHG_02238mating-type protein MAT-1CIHG_02238 covers 100% of it on the same strand
SLA2flanking_conserved387518-391450 -annotatedCIHG_02240huntingtin-interacting protein 1CIHG_02240 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CIHG_02239385896-386343 -unspecified product