Cgeophilum1.58 Cenococcum geophilum 1.58

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence medium, KV748191:1981541-1993702

MATPredictFungiDBCOX13 (flanking_conserved) KV748191:1981541-1982450 - identity 54.5COX13APN2 (flanking_conserved) KV748191:1982806-1985251 + identity 90.9APN2MAT1-2-1 (core_MAT) KV748191:1989736-1989903 - identity 41.07MAT1-2-1MAT1-1-4 (core_MAT) KV748191:1990878-1991399 + identity 25.405MAT1-1-4MAT1-1-1 (core_MAT) KV748191:1992301-1993702 + identity 45.3MAT1-1-1K441DRAFT_658420 1977850-1981590 +: hypothetical proteinK441DRAFT_658420K441DRAFT_658421 1981510-1982452 -: mitochondrial cytochrome c oxidase subunit VIaK441DRAFT_658421K441DRAFT_686539 1982806-1985251 +: DNase I-like proteinK441DRAFT_686539K441DRAFT_72340 1985407-1986152 -: hypothetical proteinK441DRAFT_72340K441DRAFT_555485 1986579-1987573 +: hypothetical proteinK441DRAFT_555485K441DRAFT_751160 1992301-1993702 +: hypothetical proteinK441DRAFT_751160K441DRAFT_634502 1994698-1998278 +: hypothetical proteinK441DRAFT_6345021978 kb1980 kb1982 kb1984 kb1986 kb1988 kb1990 kb1992 kb1994 kb1996 kb1998 kbKV748191
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1981541-1982450 -annotatedK441DRAFT_658421mitochondrial cytochrome c oxidase subunit VIaK441DRAFT_658421 covers 100% of it on the same strand
APN2flanking_conserved1982806-1985251 +annotatedK441DRAFT_686539DNase I-like proteinK441DRAFT_686539 covers 100% of it on the same strand
MAT1-2-1core_MAT1989736-1989903 -novel—no FungiDB gene overlaps this MATPredict gene
MAT1-1-4core_MAT1990878-1991399 +novel—no FungiDB gene overlaps this MATPredict gene
MAT1-1-1core_MAT1992301-1993702 +annotatedK441DRAFT_751160hypothetical proteinK441DRAFT_751160 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
K441DRAFT_6584201977850-1981590 +hypothetical protein
K441DRAFT_723401985407-1986152 -hypothetical protein
K441DRAFT_5554851986579-1987573 +hypothetical protein