CgattiiWM276 Cryptococcus gattii WM276

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP000294:153061-274435

MATPredictFungiDBFAO1 (flanking_conserved) CP000294:153061-154411 + identity 90.2FAO1SXI2 (core_MAT) CP000294:154925-155112 - identity 59.68SXI2SXI1 (core_MAT) CP000294:155558-156917 + identity 71.2SXI1STE3 (core_MAT) CP000294:234136-235454 + identity 90.8STE3MFalpha (core_MAT) CP000294:240435-240551 - identity 94.7MFalphaRPL39 (core_MAT) CP000294:260428-260927 - identity 100.0RPL39PAN6 (flanking_conserved) CP000294:272753-274435 + identity 90.5PAN6CGB_I0480C UAP1 148352-150520 -: uric acid xanthine permeaseCGB_I0480C UAP1CGB_I0490C 151411-152490 -: cytosine deaminase, putativeCGB_I0490CCGB_I0500W FAO1 153061-154411 +: putative fatty alcohol oxidase in the mating-type locusCGB_I0500W FAO1CGB_I0510W SXI1alpha 155558-156917 +: sexual development regulatorCGB_I0510W SXI1alphaCGB_I0520W 158301-158984 +: hypothetical ProteinCGB_I0520WCGB_I0530C 160075-161192 -: hypothetical ProteinCGB_I0530CCGB_I0540W 162558-164049 +: hypothetical ProteinCGB_I0540WCGB_I0550W 164129-165742 +: hypothetical protein CNBL2670CGB_I0550WCGB_I0560W 166088-166336 +: hypothetical ProteinCGB_I0560WCGB_I0570W RPL22alpha 166832-167433 +: large subunit ribosomal protein L22eCGB_I0570W RPL22alphaCGB_I0580C 167472-168136 -: protein-Golgi retention-related protein, putativeCGB_I0580CCGB_I0590W RUM1alpha 168889-174864 +: phd transcription factorCGB_I0590W RUM1alphaCGB_I0600W BSP1 175768-178510 +: protein of unknown function, encoded on mat locusCGB_I0600W BSP1CGB_I0610W 179390-182561 +: hypothetical protein CNBD0530CGB_I0610WCGB_I0620C SPO14alpha 183788-189361 -: phospholipase D1CGB_I0620C SPO14alphaCGB_I0630C CAP1alpha 191191-193434 -: capsular associated proteinCGB_I0630C CAP1alphaCGB_I0640W CID1alpha 195065-198017 +: conserved hypothetical proteinCGB_I0640W CID1alphaCGB_I0650W LPD1alpha 198514-200531 +: putative dihydrolipoyl dehydrogenaseCGB_I0650W LPD1alphaCGB_I1005C 201278-205133 -: hypothetical ProteinCGB_I1005CCGB_I1010W 206688-206903 +: pseudogeneCGB_I1010WCGB_I1020C BSP2 207015-209733 -: armadillo/beta-catenin repeat protein, encoded on mat locusCGB_I1020C BSP2CGB_I1030W RPO41alpha 210345-214352 +: RPO41pCGB_I1030W RPO41alphaCGB_I1040C STE11alpha 215078-219044 -: mapkk kinase, ste/ste11 protein kinaseCGB_I1040C STE11alphaCGB_I1050W MYO2alpha 220067-225897 +: myosin class v heavy chainCGB_I1050W MYO2alphaCGB_I1060C STE20alpha 226496-228860 -: ste/ste20/paka protein kinaseCGB_I1060C STE20alphaCGB_I1070C 229604-229901 -: hypothetical ProteinCGB_I1070CCGB_I1080C ETF1alpha 231542-232971 -: electron transfer flavoprotein alpha subunitCGB_I1080C ETF1alphaCGB_I1090W STE3alpha 234136-235454 +: a-factor pheromone receptorCGB_I1090W STE3alphaCGB_I1100W IKS1 236640-239303 +: serine/threonine-protein kinaseCGB_I1100W IKS1CGB_I1110C 240435-240551 -: MFalpha1 protein, putativeCGB_I1110CCGB_I1120W 241313-241429 +: MFalpha2 protein, putativeCGB_I1120WCGB_I1130W 242485-245147 +: eukaryotic translation initiation factor PRT1pCGB_I1130WCGB_I1140C 245289-248804 -: ZNF1pCGB_I1140CCGB_I1150C MFalpha3 251792-251908 -: mating-type pheromone alphaCGB_I1150C MFalpha3CGB_I1160W 252670-252786 +: MFalpha4p, putativeCGB_I1160WCGB_I1180W BSP3 257940-259301 +: btp/pz domain proteinCGB_I1180W BSP3CGB_I1190C RPL39alpha 260428-260927 -: large subunit ribosomal protein L39CGB_I1190C RPL39alphaCGB_I1200C STE12alpha 263025-266130 -: ste-like transcription factorCGB_I1200C STE12alphaCGB_I1210W MAT3 267832-268910 +: mat3 pheromone repeat proteinCGB_I1210W MAT3CGB_I1220W NOG2 269539-272403 +: putative nucleolar gtp-binding proteinCGB_I1220W NOG2CGB_I1230W PAN6 272753-274435 +: pantoate-beta-alanine ligaseCGB_I1230W PAN6CGB_I1240C 274637-277262 -: hypothetical proteinCGB_I1240CCGB_I1250C HSP12 278197-278618 -: heat shock protein, 12KdaCGB_I1250C HSP12CGB_I1260W 278700-279158 +: hypothetical ProteinCGB_I1260W160 kb180 kb200 kb220 kb240 kb260 kbCP000294
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
FAO1flanking_conserved153061-154411 +annotatedCGB_I0500W FAO1putative fatty alcohol oxidase in the mating-type locusCGB_I0500W covers 100% of it on the same strand
SXI2core_MAT154925-155112 -novel—no FungiDB gene overlaps this MATPredict gene
SXI1core_MAT155558-156917 +annotatedCGB_I0510W SXI1alphasexual development regulatorCGB_I0510W covers 100% of it on the same strand
STE3core_MAT234136-235454 +annotatedCGB_I1090W STE3alphaa-factor pheromone receptorCGB_I1090W covers 100% of it on the same strand
MFalphacore_MAT240435-240551 -annotatedCGB_I1110CMFalpha1 protein, putativeCGB_I1110C covers 100% of it on the same strand
RPL39core_MAT260428-260927 -annotatedCGB_I1190C RPL39alphalarge subunit ribosomal protein L39CGB_I1190C covers 100% of it on the same strand
PAN6flanking_conserved272753-274435 +annotatedCGB_I1230W PAN6pantoate-beta-alanine ligaseCGB_I1230W covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CGB_I0520W158301-158984 +hypothetical Protein
CGB_I0530C160075-161192 -hypothetical Protein
CGB_I0540W162558-164049 +hypothetical Protein
CGB_I0550W164129-165742 +hypothetical protein CNBL2670
CGB_I0560W166088-166336 +hypothetical Protein
CGB_I0570W RPL22alpha166832-167433 +large subunit ribosomal protein L22e
CGB_I0580C167472-168136 -protein-Golgi retention-related protein, putative
CGB_I0590W RUM1alpha168889-174864 +phd transcription factor
CGB_I0600W BSP1175768-178510 +protein of unknown function, encoded on mat locus
CGB_I0610W179390-182561 +hypothetical protein CNBD0530
CGB_I0620C SPO14alpha183788-189361 -phospholipase D1
CGB_I0630C CAP1alpha191191-193434 -capsular associated protein
CGB_I0640W CID1alpha195065-198017 +conserved hypothetical protein
CGB_I0650W LPD1alpha198514-200531 +putative dihydrolipoyl dehydrogenase
CGB_I1005C201278-205133 -hypothetical Protein
CGB_I1010W206688-206903 +pseudogene
CGB_I1020C BSP2207015-209733 -armadillo/beta-catenin repeat protein, encoded on mat locus
CGB_I1030W RPO41alpha210345-214352 +RPO41p
CGB_I1040C STE11alpha215078-219044 -mapkk kinase, ste/ste11 protein kinase
CGB_I1050W MYO2alpha220067-225897 +myosin class v heavy chain
CGB_I1060C STE20alpha226496-228860 -ste/ste20/paka protein kinase
CGB_I1070C229604-229901 -hypothetical Protein
CGB_I1080C ETF1alpha231542-232971 -electron transfer flavoprotein alpha subunit
CGB_I1100W IKS1236640-239303 +serine/threonine-protein kinase
CGB_I1120W241313-241429 +MFalpha2 protein, putative
CGB_I1130W242485-245147 +eukaryotic translation initiation factor PRT1p
CGB_I1140C245289-248804 -ZNF1p
CGB_I1150C MFalpha3251792-251908 -mating-type pheromone alpha
CGB_I1160W252670-252786 +MFalpha4p, putative
CGB_I1180W BSP3257940-259301 +btp/pz domain protein
CGB_I1200C STE12alpha263025-266130 -ste-like transcription factor
CGB_I1210W MAT3267832-268910 +mat3 pheromone repeat protein
CGB_I1220W NOG2269539-272403 +putative nucleolar gtp-binding protein