CgattiiIND107 Cryptococcus gattii VGIV IND107
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence medium, KN848863:503752-608408
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| PAN6 | flanking_conserved | 503752-505440 - | annotated | I308_03659 | pantoate-beta-alanine ligase | I308_03659 covers 100% of it on the same strand |
| RPL39 | core_MAT | 517179-517678 + | annotated | I308_03664 | 60S ribosomal protein L39 | I308_03664 covers 100% of it on the same strand |
| MFalpha | core_MAT | 524630-524746 - | annotated | I308_03666 | fungal mating-type pheromone | I308_03666 covers 100% of it on the same strand |
| STE3 | core_MAT | 541501-542819 - | annotated | I308_03673 | pheromone a factor receptor | I308_03673 covers 100% of it on the same strand |
| SXI1 | core_MAT | 604896-606254 - | annotated | I308_03689 | hypothetical protein | I308_03689 covers 100% of it on the same strand |
| FAO1 | flanking_conserved | 607061-608408 - | annotated | I308_03690 | hypothetical protein | I308_03690 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| I308_03660 | 505767-508599 - | nucleolar GTP-binding protein 2 |
| I308_03661 | 508750-509119 + | hypothetical protein |
| I308_03662 | 509212-510253 - | hypothetical protein |
| I308_03663 | 514333-514646 + | hypothetical protein |
| I308_03665 | 518803-520165 - | hypothetical protein |
| I308_03667 | 525860-525898 + | hypothetical protein |
| I308_03668 | 528378-531916 + | hypothetical protein |
| I308_03669 | 532057-534719 - | eukaryotic translation initiation factor 3 subunit B |
| I308_03670 | 535765-535881 - | fungal mating-type pheromone |
| I308_03671 | 536651-536767 + | fungal mating-type pheromone |
| I308_03672 | 537926-540589 - | IKS protein kinase |
| I308_03674 | 544085-545511 + | electron transfer flavoprotein alpha subunit |
| I308_03675 | 548478-550833 + | STE/STE20/PAKA protein kinase |
| I308_03676 | 551434-557255 - | hypothetical protein |
| I308_03677 | 558242-562227 + | STE/STE11 protein kinase |
| I308_03678 | 562664-566671 - | DNA-directed RNA polymerase, mitochondrial |
| I308_03679 | 567293-570011 + | hypothetical protein |
| I308_03680 | 571385-571639 - | hypothetical protein |
| I308_03681 | 572663-575614 - | hypothetical protein |
| I308_03682 | 577418-579660 + | hypothetical protein |
| I308_03683 | 580948-586523 + | phospholipase D |
| I308_03684 | 587738-590911 - | hypothetical protein |
| I308_03685 | 591802-594558 - | hypothetical protein |
| I308_03686 | 595442-601418 - | histone demethylase JARID1 |
| I308_03687 | 602248-602558 + | hypothetical protein |
| I308_03688 | 602866-603467 - | 50S small subunit ribosomal protein L22e |