CgattiiCA1873 Cryptococcus gattii CA1873
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: a Basidiomycota:MAT, confidence high, KN848897:134584-253284
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| SXI2 | core_MAT | 134584-137112 - | annotated | I314_03611 | hypothetical protein | I314_03611 covers 100% of it on the same strand |
| RPL39 | core_MAT | 155342-155597 + | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| STE3 | core_MAT | 215238-216570 - | annotated | I314_03631 | hypothetical protein | I314_03631 covers 100% of it on the same strand |
| MFa | core_MAT | 241431-241553 + | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| PAN6 | flanking_conserved | 251592-253284 + | annotated | I314_03639 | pantoate-beta-alanine ligase | I314_03639 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| I314_03612 | 138253-138591 - | hypothetical protein |
| I314_03613 | 140121-144538 - | phospholipase D |
| I314_03614 | 146006-148244 + | hypothetical protein |
| I314_03615 | 151954-152603 + | hypothetical protein |
| I314_03616 | 157573-159344 - | hypothetical protein |
| I314_03617 | 162977-166984 - | DNA-directed RNA polymerase, mitochondrial |
| I314_03618 | 167602-170318 + | hypothetical protein |
| I314_03619 | 170739-171446 - | hypothetical protein |
| I314_03620 | 173023-175973 - | hypothetical protein |
| I314_03621 | 176838-180007 - | hypothetical protein |
| I314_03622 | 181144-181767 + | hypothetical protein |
| I314_03623 | 183035-185786 - | hypothetical protein |
| I314_03624 | 192052-192456 - | hypothetical protein |
| I314_03625 | 194580-195178 + | 50S small subunit ribosomal protein L22e |
| I314_03626 | 196021-197431 + | electron transfer flavoprotein alpha subunit |
| I314_03627 | 199165-199539 + | hypothetical protein |
| I314_03628 | 199752-204635 - | STE/STE11 protein kinase |
| I314_03629 | 207080-209849 + | eukaryotic translation initiation factor 3 subunit B |
| I314_03630 | 209971-213602 - | hypothetical protein |
| I314_03632 | 219738-220293 - | hypothetical protein |
| I314_03633 | 224024-224371 + | hypothetical protein |
| I314_03634 | 225339-227783 + | STE/STE20/PAKA protein kinase |
| I314_03635 | 230854-232502 - | IKS protein kinase |
| I314_03636 | 234632-240416 + | hypothetical protein |
| I314_03637 | 247159-247690 + | hypothetical protein |
| I314_03638 | 248395-251251 + | nucleolar GTP-binding protein 2 |