Ccf.gattiiMF34 Cryptococcus cf. gattii MF34

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CM018868:59680-262446

MATPredictFungiDBFAO1 (flanking_conserved) CM018868:146033-147380 + identity 85.2FAO1SXI2 (core_MAT) CM018868:147892-148082 - identity 70.97SXI2SXI1 (core_MAT) CM018868:148521-151835 + identity 71.7SXI1STE3 (core_MAT) CM018868:224262-228685 + identity 92.6STE3MFalpha (core_MAT) CM018868:229842-229955 - identity 94.74MFalphaRPL39 (core_MAT) CM018868:248437-254192 - identity 98.0RPL39PAN6 (flanking_conserved) CM018868:260700-262446 + identity 91.5PAN6D1P53_003236 52210-57774 +: unspecified productD1P53_003236D1P53_003237 59558-63409 +: unspecified productD1P53_003237D1P53_003238 64020-66912 -: elongation factor 2D1P53_003238D1P53_003239 69433-69515 -: tRNA-TrpD1P53_003239D1P53_003240 69998-71181 -: unspecified productD1P53_003240D1P53_003241 71763-74000 +: unspecified productD1P53_003241D1P53_003242 74813-77142 +: unspecified productD1P53_003242D1P53_003243 77486-79239 -: unspecified productD1P53_003243D1P53_003244 81632-83976 +: unspecified productD1P53_003244D1P53_003245 84252-87437 -: unspecified productD1P53_003245D1P53_003246 92103-94269 +: unspecified productD1P53_003246D1P53_003247 95092-97836 -: histidinol dehydrogenaseD1P53_003247D1P53_003248 98192-100000 -: unspecified productD1P53_003248D1P53_003249 101567-104432 +: unspecified productD1P53_003249D1P53_003250 105675-106865 +: unspecified productD1P53_003250D1P53_003251 108434-110454 +: unspecified productD1P53_003251D1P53_003252 111006-112777 -: unspecified productD1P53_003252D1P53_003253 112956-115709 +: unspecified productD1P53_003253D1P53_003254 116571-117308 +: unspecified productD1P53_003254D1P53_003255 117547-120248 -: unspecified productD1P53_003255D1P53_003256 121094-123438 -: unspecified productD1P53_003256D1P53_003257 124785-125639 +: unspecified productD1P53_003257D1P53_003258 125889-132158 -: unspecified productD1P53_003258D1P53_003259 134523-137294 -: unspecified productD1P53_003259D1P53_003260 137675-140569 +: unspecified productD1P53_003260D1P53_003261 141300-143467 -: unspecified productD1P53_003261D1P53_003262 144379-145456 -: unspecified productD1P53_003262D1P53_003263 146033-147380 +: unspecified productD1P53_003263D1P53_003264 148521-151835 +: unspecified productD1P53_003264D1P53_003265 153263-159236 +: unspecified productD1P53_003265D1P53_003266 160130-162515 +: unspecified productD1P53_003266D1P53_003267 163772-166944 +: unspecified productD1P53_003267D1P53_003268 167440-174038 -: unspecified productD1P53_003268D1P53_003269 175600-177843 -: unspecified productD1P53_003269D1P53_003270 179664-182614 +: unspecified productD1P53_003270D1P53_003271 183075-185142 +: dihydrolipoyl dehydrogenaseD1P53_003271D1P53_003272 185271-187968 -: unspecified productD1P53_003272D1P53_003273 188224-192597 +: unspecified productD1P53_003273D1P53_003274 192993-196954 -: unspecified productD1P53_003274D1P53_003275 197951-203782 +: unspecified productD1P53_003275D1P53_003276 204336-206743 -: unspecified productD1P53_003276D1P53_003277 207601-212846 -: unspecified productD1P53_003277D1P53_003278 213128-216310 +: unspecified productD1P53_003278D1P53_003279 221132-222557 -: unspecified productD1P53_003279D1P53_003280 224262-228685 +: unspecified productD1P53_003280D1P53_003281 234020-236777 +: unspecified productD1P53_003281D1P53_003282 236918-239577 -: eukaryotic translation initiation factor 3 subunit BD1P53_003282D1P53_003283 244581-246711 +: unspecified productD1P53_003283D1P53_003284 248437-254192 -: 60S ribosomal protein L39D1P53_003284D1P53_003285 255865-256944 +: unspecified productD1P53_003285D1P53_003286 257596-260423 +: nucleolar GTP-binding protein 2D1P53_003286D1P53_003287 260700-262446 +: pantoate-beta-alanine ligaseD1P53_003287D1P53_003288 262650-265275 -: unspecified productD1P53_00328860 kb80 kb100 kb120 kb140 kb160 kb180 kb200 kb220 kb240 kb260 kbCM018868
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
FAO1flanking_conserved146033-147380 +annotatedD1P53_003263unspecified productD1P53_003263 covers 100% of it on the same strand
SXI2core_MAT147892-148082 -novel—no FungiDB gene overlaps this MATPredict gene
SXI1core_MAT148521-151835 +annotatedD1P53_003264unspecified productD1P53_003264 covers 100% of it on the same strand
STE3core_MAT224262-228685 +annotatedD1P53_003280unspecified productD1P53_003280 covers 100% of it on the same strand
MFalphacore_MAT229842-229955 -novel—no FungiDB gene overlaps this MATPredict gene
RPL39core_MAT248437-254192 -annotatedD1P53_00328460S ribosomal protein L39D1P53_003284 covers 100% of it on the same strand
PAN6flanking_conserved260700-262446 +annotatedD1P53_003287pantoate-beta-alanine ligaseD1P53_003287 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
D1P53_00323759558-63409 +unspecified product
D1P53_00323864020-66912 -elongation factor 2
D1P53_00323969433-69515 -tRNA-Trp
D1P53_00324069998-71181 -unspecified product
D1P53_00324171763-74000 +unspecified product
D1P53_00324274813-77142 +unspecified product
D1P53_00324377486-79239 -unspecified product
D1P53_00324481632-83976 +unspecified product
D1P53_00324584252-87437 -unspecified product
D1P53_00324692103-94269 +unspecified product
D1P53_00324795092-97836 -histidinol dehydrogenase
D1P53_00324898192-100000 -unspecified product
D1P53_003249101567-104432 +unspecified product
D1P53_003250105675-106865 +unspecified product
D1P53_003251108434-110454 +unspecified product
D1P53_003252111006-112777 -unspecified product
D1P53_003253112956-115709 +unspecified product
D1P53_003254116571-117308 +unspecified product
D1P53_003255117547-120248 -unspecified product
D1P53_003256121094-123438 -unspecified product
D1P53_003257124785-125639 +unspecified product
D1P53_003258125889-132158 -unspecified product
D1P53_003259134523-137294 -unspecified product
D1P53_003260137675-140569 +unspecified product
D1P53_003261141300-143467 -unspecified product
D1P53_003262144379-145456 -unspecified product
D1P53_003265153263-159236 +unspecified product
D1P53_003266160130-162515 +unspecified product
D1P53_003267163772-166944 +unspecified product
D1P53_003268167440-174038 -unspecified product
D1P53_003269175600-177843 -unspecified product
D1P53_003270179664-182614 +unspecified product
D1P53_003271183075-185142 +dihydrolipoyl dehydrogenase
D1P53_003272185271-187968 -unspecified product
D1P53_003273188224-192597 +unspecified product
D1P53_003274192993-196954 -unspecified product
D1P53_003275197951-203782 +unspecified product
D1P53_003276204336-206743 -unspecified product
D1P53_003277207601-212846 -unspecified product
D1P53_003278213128-216310 +unspecified product
D1P53_003279221132-222557 -unspecified product
D1P53_003281234020-236777 +unspecified product
D1P53_003282236918-239577 -eukaryotic translation initiation factor 3 subunit B
D1P53_003283244581-246711 +unspecified product
D1P53_003285255865-256944 +unspecified product
D1P53_003286257596-260423 +nucleolar GTP-binding protein 2