CaurisB11220 Candida auris strain B11220

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MTL_0: alpha Ascomycota:MTL, confidence high, CP043531:2563022-2569478

MATPredictFungiDBPAP1 (flanking_variable) CP043531:2563022-2564710 + identity 100.0PAP1MTLalpha1 (core_MAT) CP043531:2564710-2565225 - identity 99.42MTLalpha1PIK1 (flanking_variable) CP043531:2565318-2568113 - identity 100.0PIK1OBP1 (flanking_variable) CP043531:2568285-2569478 - identity 100.0OBP1CJI96_0001188 2557354-2559789 -: hypothetical_proteinCJI96_0001188CJI96_0001189 2560594-2562924 +: hypothetical_proteinCJI96_0001189CJI96_0001190 2563022-2564710 +: Poly(A)_polymerase_PAPalphaCJI96_0001190CJI96_0001191 2565318-2568113 -: hypothetical_proteinCJI96_0001191CJI96_0001192 2568285-2569478 -: hypothetical_proteinCJI96_0001192CJI96_0001193 2570150-2571631 -: hypothetical_proteinCJI96_0001193CJI96_0001194 2572804-2574105 -: hypothetical_proteinCJI96_00011942560 kb2562 kb2564 kb2566 kb2568 kb2570 kb2572 kb2574 kbCP043531
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
PAP1flanking_variable2563022-2564710 +annotatedCJI96_0001190Poly(A)_polymerase_PAPalphaCJI96_0001190 covers 100% of it on the same strand
MTLalpha1core_MAT2564710-2565225 -partialCJI96_0001190Poly(A)_polymerase_PAPalphaCJI96_0001190 overlaps 0% but on the opposite strand
PIK1flanking_variable2565318-2568113 -annotatedCJI96_0001191hypothetical_proteinCJI96_0001191 covers 100% of it on the same strand
OBP1flanking_variable2568285-2569478 -annotatedCJI96_0001192hypothetical_proteinCJI96_0001192 covers 100% of it on the same strand