CalbicansWO1 Candida albicans WO-1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MTL_0: alpha Ascomycota:MTL, confidence high, Supercontig_1.6_C_albicans_WO-1:385141-393321

MATPredictFungiDBPAP1 (flanking_variable) Supercontig_1.6_C_albicans_WO-1:385141-386817 + identity 99.8PAP1MTLalpha1 (core_MAT) Supercontig_1.6_C_albicans_WO-1:386852-387433 - identity 100.0MTLalpha1PIK1 (flanking_variable) Supercontig_1.6_C_albicans_WO-1:387645-390578 - identity 99.9PIK1OBP1 (flanking_variable) Supercontig_1.6_C_albicans_WO-1:390822-392111 - identity 99.5OBP1MTLalpha2 (core_MAT) Supercontig_1.6_C_albicans_WO-1:392818-393321 + identity 100.0MTLalpha2CAWG_04557 378948-381500 -: Has domain(s) with predicted protein binding activity, role in exocytosis, vesicle docking and cytoplasm localizationCAWG_04557CAWG_04558 381902-384568 +: Protein of unknown functionCAWG_04558CAWG_04559 385141-386817 +: Ortholog(s) have polynucleotide adenylyltransferase, RNA binding activity and role in mRNA polyadenylation, single-species biofilm formation on inanimate substrateCAWG_04559CAWG_04560 386852-387433 -: Has domain(s) with predicted mating pheromone, DNA binding activity, role in positive regulation of mating-type specific transcription, DNA-dependent and nucleus localizationCAWG_04560CAWG_04561 387645-390578 -: Ortholog(s) have role in single-species biofilm formation on inanimate substrateCAWG_04561CAWG_04562 390822-392111 -: Ortholog(s) have role in pathogenesis, single-species biofilm formation on inanimate substrateCAWG_04562CAWG_04563 392818-393321 +: Has domain(s) with predicted sequence-specific DNA binding transcription factor, sequence-specific DNA binding activity and role in regulation of transcription, DNA-dependentCAWG_04563CAWG_04564 393686-394090 -: Protein of unknown functionCAWG_04564CAWG_04565 394113-395912 -: Ortholog(s) have amino acid transmembrane transporter activityCAWG_04565382 kb384 kb386 kb388 kb390 kb392 kb394 kb396 kb398 kbSupercontig_1.6_C_albicans_WO-1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
PAP1flanking_variable385141-386817 +annotatedCAWG_04559Ortholog(s) have polynucleotide adenylyltransferase, RNA binding activity and role in mRNA polyadenylation, single-species biofilm formation on inanimate substrateCAWG_04559 covers 100% of it on the same strand
MTLalpha1core_MAT386852-387433 -annotatedCAWG_04560Has domain(s) with predicted mating pheromone, DNA binding activity, role in positive regulation of mating-type specific transcription, DNA-dependent and nucleus localizationCAWG_04560 covers 100% of it on the same strand
PIK1flanking_variable387645-390578 -annotatedCAWG_04561Ortholog(s) have role in single-species biofilm formation on inanimate substrateCAWG_04561 covers 100% of it on the same strand
OBP1flanking_variable390822-392111 -annotatedCAWG_04562Ortholog(s) have role in pathogenesis, single-species biofilm formation on inanimate substrateCAWG_04562 covers 100% of it on the same strand
MTLalpha2core_MAT392818-393321 +annotatedCAWG_04563Has domain(s) with predicted sequence-specific DNA binding transcription factor, sequence-specific DNA binding activity and role in regulation of transcription, DNA-dependentCAWG_04563 covers 100% of it on the same strand