MATPredict · mating-type report

BhordeiRACE1

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:15 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1medium confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

medium confidence
Gene order of the MAT1-1 locus on UNSH01000074MAT1-1 locus: genes from left to right on UNSH01000074, 2,094,686 to 2,099,420: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand).2,095 kb2,096 kb2,097 kb2,098 kb2,099 kb812.2 kb more to contig end →called locusSLA2: conserved flank, 2,094,686–2,098,049 (+), identity 81.6%, search hit onlySLA2MAT1-1-1: core MAT gene, 2,098,595–2,099,420 (+), identity 41.3%, search hit onlyMAT1-1-1
Gene order on UNSH01000074. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on UNSH01000074, 2,094,386 to 2,099,720BLGHR1_16101 2,094,579-2,098,349 (+): probable cytoskeleton assembly control SLA2BLGHR1_16101BLGHR1_16102 2,098,517-2,099,855 (+): MAT1-1-1BLGHR1_16102
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
UNSH01000074:2,094,686–2,099,420 · 4.7 kb
Own genes
UNSH01000074:2,094,686–2,099,420 · 4.7 kb
Locus
Provisional: the call only tied the admission bar, or came from the relaxed pass.
Genes modelled
2 of 2 gene hits
Nearest contig end
812.5 kb
Region (samtools)
UNSH01000074:2094686-2099420
Idiomorph scores
  • MAT1-1 122.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome81.6cov 99.3%< 1e-1801,329 bits2,094,686–2,098,049 +–107463_unknown-1_MAT_MAT1-2BLGHR1_16101
MAT1-1-1core MAThit onlyDIAMOND, proteome41.3cov 39.9%2.0e-35122 bits2,098,595–2,099,420 +–40559_sas56_MAT_MAT1-1BLGHR1_16102
APN2expected, not found–
COX13expected, not found–

Provenance

Genome file
BhordeiRACE1.genome.fasta
Assembly
99 contigs · 116.5 Mb · N50 3.9 Mb
Genome SHA-256
8d8d0352617b83be476e3de7455bc6b1c53a59dfcff727214f2a03d6ca64c184
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 34371, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 34371', 'routed_by': 'family taxid 34371 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:11:52Z
Run time
188 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits