BgilchristiiSLH14081 Blastomyces gilchristii SLH14081

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, GG657461:1036425-1047219

MATPredictFungiDBCIMG_00407 (core_MAT) GG657461:1036425-1037032 - identity 40.62CIMG_00407MAT1-2-4 (core_MAT) GG657461:1036541-1037023 - identity 25.466MAT1-2-4MAT1-2-1 (core_MAT) GG657461:1037871-1039012 + identity 52.4MAT1-2-1MAT1-1-4 (core_MAT) GG657461:1040186-1040887 - identity 40.2MAT1-1-4COX13 (flanking_conserved) GG657461:1043680-1044604 - identity 80.4COX13APN2 (flanking_conserved) GG657461:1044952-1047219 + identity 71.1APN2BDBG_06645 1035424-1037531 -: unspecified productBDBG_06645BDBG_06646 1035426-1039721 +: HMG domain-containing protein, variant 4BDBG_06646BDBG_06647 1039410-1041026 -: hypothetical protein, variantBDBG_06647BDBG_06648 1041730-1043297 -: unspecified productBDBG_06648BDBG_06649 1043377-1048515 -: cytochrome c oxidase subunit 6aBDBG_06649BDBG_06650 1044806-1048538 +: AP endonuclease 2BDBG_06650BDBG_06651 1049380-1054794 +: RNA polymerase II mediator complex component Srb8BDBG_066511032 kb1034 kb1036 kb1038 kb1040 kb1042 kb1044 kb1046 kb1048 kb1050 kb1052 kbGG657461
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
CIMG_00407core_MAT1036425-1037032 -annotatedBDBG_06645unspecified productBDBG_06645 covers 100% of it on the same strand
MAT1-2-4core_MAT1036541-1037023 -annotatedBDBG_06645unspecified productBDBG_06645 covers 100% of it on the same strand
MAT1-2-1core_MAT1037871-1039012 +annotatedBDBG_06646HMG domain-containing protein, variant 4BDBG_06646 covers 100% of it on the same strand
MAT1-1-4core_MAT1040186-1040887 -annotatedBDBG_06647hypothetical protein, variantBDBG_06647 covers 100% of it on the same strand
COX13flanking_conserved1043680-1044604 -annotatedBDBG_06649cytochrome c oxidase subunit 6aBDBG_06649 covers 100% of it on the same strand
APN2flanking_conserved1044952-1047219 +partialBDBG_06649cytochrome c oxidase subunit 6aBDBG_06649 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BDBG_066481041730-1043297 -unspecified product