MATPredict · mating-type report

BdermatitidisER-3

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:01 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-2medium confidence

Called loci 1

MAT1-2 MAT family · Ascomycota

medium confidence
Gene order of the MAT1-2 locus on EQ999978MAT1-2 locus: genes from left to right on EQ999978, 1,559,343 to 1,588,314: APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand); MAT1-1-4 (core MAT gene, plus strand); MAT1-1-3 (core MAT gene, minus strand); MAT1-2-1 (core MAT gene, minus strand); CIMG_00407 (core MAT gene, plus strand); MAT1-2-4 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).1,560 kb1,565 kb1,570 kb1,575 kb1,580 kb1,585 kb← 1,557.9 kb more to contig endcalled locusAPN2: conserved flank, 1,559,343–1,561,636 (-), identity 79.5%, search hit onlyAPN2COX13: conserved flank, 1,561,989–1,562,879 (+), identity 78.8%, search hit onlyCOX13MAT1-1-4: core MAT gene, 1,565,687–1,566,388 (+), identity 40.2%, search hit onlyMAT1-1-4MAT1-1-3: core MAT gene, 1,567,558–1,568,699 (-), identity 39.0%, search hit onlyMAT1-1-3 (lost to MAT1-2-1)MAT1-2-1: core MAT gene, 1,567,558–1,568,699 (-), identity 52.4%, search hit onlyMAT1-2-1CIMG_00407: core MAT gene, 1,569,538–1,570,145 (+), identity 40.62%, gene modelCIMG_00407MAT1-2-4: core MAT gene, 1,569,547–1,570,029 (+), identity 25.466%, search hit onlyMAT1-2-4SLA2: conserved flank, 1,584,018–1,588,314 (-), identity 89.4%, search hit onlySLA2
Gene order on EQ999978. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on EQ999978, 1,557,896 to 1,589,762BDCG_05967 1,550,911-1,558,304 (-): RNA polymerase II mediator complex component Srb8BDCG_05967BDCG_05968 1,559,343-1,561,636 (-): AP endonuclease 2BDCG_05968BDCG_05969 1,561,989-1,562,879 (+): cytochrome c oxidase subunit 6aBDCG_05969BDCG_05970 1,563,296-1,564,562 (+): unspecified productBDCG_05970BDCG_05971 1,565,548-1,566,754 (+): unspecified productBDCG_05971BDCG_05972 1,566,851-1,571,144 (-): HMG domain-containing protein, variant 3BDCG_05972BDCG_05973 1,569,039-1,571,141 (+): unspecified productBDCG_05973BDCG_05975 1,582,358-1,588,616 (-): SlaB proteinBDCG_05975BDCG_05976 1,588,837-1,592,505 (-): PH domain-containing proteinBDCG_05976
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • gene model
  • search hit only
Location
EQ999978:1,559,343–1,588,314 · 29.0 kb
Own genes
EQ999978:1,559,343–1,588,314 · 29.0 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
6 of 8 gene hits
Nearest contig end
1.6 Mb
Region (samtools)
EQ999978:1559343-1588314
Idiomorph scores
  • MAT1-2 304.0
  • MAT1-1 83.6

Margin over the next idiomorph: 220.4

Score: bitscore of the best core-gene hit for each idiomorph.

Overlapping hits resolved

Where genes of two idiomorphs hit the same place, the stronger hit was kept.

keptidentity %set asideidentity %overlap %basis
MAT1-2-152.4MAT1-1-339.0100.0higher identity

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
APN2conserved flankhit onlyDIAMOND, proteome79.5cov 36.7%7.0e-236661 bits1,559,343–1,561,636 -–2903220_liq80xsp_MAT_combinedBDCG_05968
COX13conserved flankhit onlyDIAMOND, proteome78.8cov 73.3%1.2e-48147 bits1,561,989–1,562,879 +–5501_rs_MAT_MAT1-2BDCG_05969
MAT1-1-4core MAThit onlyDIAMOND, proteome40.2cov 48.8%1.6e-2284 bits1,565,687–1,566,388 +–199306_rmscc1040_MAT_MAT1-1BDCG_05971
MAT1-1-3core MATlost to MAT1-2-1, not countedhit onlyDIAMOND, proteome39.0cov 45.6%2.6e-1257 bits1,567,558–1,568,699 -–230073_uamh-1363_MAT_MAT1-1BDCG_05972
MAT1-2-1core MAThit onlyDIAMOND, proteome52.4cov 21.8%1.1e-104304 bits1,567,558–1,568,699 -–40559_sas405_MAT_MAT1-2BDCG_05972
CIMG_00407core MATgene modelexonerate40.6cov 62.4%2.8e-32125 bits1,569,538–1,570,145 +35501_rs_MAT_MAT1-2BDCG_05972 (opposite strand)
BDCG_05973
MAT1-2-4core MAThit onlytblastn25.5cov 57.0%8.9e-1266 bits1,569,547–1,570,029 +–746128_af293_MAT_MAT1-2BDCG_05972 (opposite strand)
BDCG_05973
SLA2conserved flankhit onlyDIAMOND, proteome89.4cov 99.3%< 1e-1801,603 bits1,584,018–1,588,314 -–107463_unknown-1_MAT_MAT1-2BDCG_05975
MAT1-1-1expected, not found–

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATEQ999982:2,403,706–2,406,017MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
BdermatitidisER-3.genome.fasta
Assembly
27 contigs · 66.6 Mb · N50 5.6 Mb
Genome SHA-256
190112438b190d43f11d744656d7aabfb863e52b8a75fab796747eb92b619c17
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 299071, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 299071', 'routed_by': 'family taxid 299071 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:59:39Z
Run time
111 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits