MATPredict · mating-type report

BcinereaB05-10

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:57 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on bcin_chr_1MAT1-1 locus: genes from left to right on bcin_chr_1, 808,494 to 821,433: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-2-1 (core MAT gene, minus strand); MAT1-1-5 (core MAT gene, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).810 kb815 kb820 kb← 807.8 kb more to contig endcalled locusCOX13: conserved flank, 808,494–809,195 (-), identity 63.6%, search hit onlyCOX13APN2: conserved flank, 809,663–811,851 (+), identity 84.1%, search hit onlyAPN2MAT1-2-1: core MAT gene, 813,026–813,205 (-), identity 70.0%, the two modelling tools disagreeMAT1-2-1MAT1-1-5: core MAT gene, 813,478–814,778 (+), identity 100.0%, search hit onlyMAT1-1-5MAT1-1-1: core MAT gene, 815,137–816,297 (+), identity 100.0%, search hit onlyMAT1-1-1SLA2: conserved flank, 817,947–821,433 (-), identity 91.1%, search hit onlySLA2
Gene order on bcin_chr_1. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on bcin_chr_1, 807,848 to 822,080Bcin01g02110 805,657-808,360 (+): unspecified productBcin01g02110Bcin01g02120 808,363-809,280 (-): unspecified productBcin01g02120 Bccox13Bcin01g02130 809,432-812,099 (+): unspecified productBcin01g02130 Bcapn2Bcin01g02140 813,342-814,869 (+): unspecified productBcin01g02140Bcin01g02150 814,948-816,426 (+): unspecified productBcin01g02150Bcin01g02160 817,328-821,589 (-): unspecified productBcin01g02160 Bcsla2Bcin01g02170 821,725-825,423 (-): unspecified productBcin01g02170 Bcnvj2
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • tools disagree
  • alternate model
  • search hit only
Location
bcin_chr_1:808,494–821,433 · 12.9 kb
Own genes
bcin_chr_1:808,494–821,433 · 12.9 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
6 of 6 gene hits
Nearest contig end
808.5 kb
Region (samtools)
bcin_chr_1:808494-821433
Idiomorph scores
  • MAT1-1 768.0
  • MAT1-2 87.4

Margin over the next idiomorph: 680.6

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome63.6cov 89.2%1.7e-53158 bits808,494–809,195 -–578113_sxlc146_MAT_MAT1-2Bcin01g02120 Bccox13
APN2conserved flankhit onlyDIAMOND, proteome84.1cov 36.7%3.7e-242673 bits809,663–811,851 +–2903220_liq80xsp_MAT_combinedBcin01g02130 Bcapn2
MAT1-2-1core MATmodels differexonerateminiprot: 813,023–813,148, 82.9%3 internal stopsdefective gene model70.0cov 16.0%2.8e-1887 bits813,026–813,205 -140559_sas405_MAT_MAT1-2none
MAT1-1-5core MAThit onlyDIAMOND, proteome100.0cov 100.0%5.4e-287768 bits813,478–814,778 +–40559_sas56_MAT_MAT1-1Bcin01g02140
MAT1-1-1core MAThit onlyDIAMOND, proteome100.0cov 100.0%3.4e-267716 bits815,137–816,297 +–40559_sas56_MAT_MAT1-1Bcin01g02150
SLA2conserved flankhit onlyDIAMOND, proteome91.1cov 100.0%< 1e-1801,334 bits817,947–821,433 -–28548_06cwm-g22_MAT_combinedBcin01g02160 Bcsla2

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATbcin_chr_9:1,022,188–1,029,466MAT1-2MAT1-1-1, MAT1-2-11too few of the family's genes found

Provenance

Genome file
BcinereaB05-10.genome.fasta
Assembly
18 contigs · 42.6 Mb · N50 2.6 Mb
Genome SHA-256
c2a142bd0c5be0330996890de91dbd4012a997e597f52f0304e8d918fe86f76d
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 28983, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 28983', 'routed_by': 'family taxid 28983 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:55:51Z
Run time
89 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits