MATPredict · mating-type report

AuvarumCBS121591

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:48 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KZ821707MAT1-1 locus: genes from left to right on KZ821707, 284,503 to 307,275: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-2-1 (core MAT gene, minus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).285 kb290 kb295 kb300 kb305 kb57.4 kb more to contig end →called locusCOX13: conserved flank, 284,503–285,370 (-), identity 78.3%, search hit onlyCOX13APN2: conserved flank, 285,789–287,951 (+), identity 93.2%, search hit onlyAPN2MAT1-2-1: core MAT gene, 289,186–290,129 (-), identity 30.6%, search hit onlyMAT1-2-1MAT1-1-1: core MAT gene, 290,330–291,497 (+), identity 58.5%, search hit onlyMAT1-1-1SLA2: conserved flank, 303,413–307,275 (-), identity 89.5%, search hit onlySLA2
Gene order on KZ821707. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on KZ821707, 283,365 to 308,414BO82DRAFT_104007 281,203-284,435 (+): putative anaphase-promoting complex subunit Apc5BO82DRAFT_104007BO82DRAFT_337661 284,113-285,370 (-): mitochondrial cytochrome c oxidase subunit VIaBO82DRAFT_337661BO82DRAFT_384237 285,746-288,244 (+): DNA lyase Apn2BO82DRAFT_384237BO82DRAFT_433154 288,985-290,129 (-): Ribosome assembly protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A319CB23]BO82DRAFT_433154BO82DRAFT_312417 290,330-291,676 (+): Alpha box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A319CYV2]BO82DRAFT_312417BO82DRAFT_355274 295,025-296,464 (+): HD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A319C9W0]BO82DRAFT_355274BO82DRAFT_355275 296,295-298,074 (-): putative aldehyde dehydrogenase family proteinBO82DRAFT_355275BO82DRAFT_104087 298,476-300,437 (+): CAIB/BAIF family enzymeBO82DRAFT_104087BO82DRAFT_285672 300,541-302,223 (+): FAD/NAD(P)-binding domain-containing proteinBO82DRAFT_285672BO82DRAFT_337681 303,007-307,578 (-): cytoskeleton assembly control protein Sla2BO82DRAFT_337681BO82DRAFT_104228 308,043-311,103 (-): SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A319C6H1]BO82DRAFT_104228
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KZ821707:284,503–307,275 · 22.8 kb
Own genes
KZ821707:284,503–307,275 · 22.8 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
5 of 5 gene hits
Nearest contig end
58.5 kb
Region (samtools)
KZ821707:284503-307275
Idiomorph scores
  • MAT1-1 291.0
  • MAT1-2 47.0

Margin over the next idiomorph: 244.0

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome78.3cov 87.3%1.8e-73209 bits284,503–285,370 -–162425_fgsc-a4_MAT_combinedBO82DRAFT_337661
APN2conserved flankhit onlyDIAMOND, proteome93.2cov 36.7%1.6e-313857 bits285,789–287,951 +–2903220_liq80xsp_MAT_combinedBO82DRAFT_384237
MAT1-2-1core MAThit onlyDIAMOND, proteome30.6cov 43.5%2.3e-0947 bits289,186–290,129 -–746128_af293_MAT_MAT1-2BO82DRAFT_433154
MAT1-1-1core MAThit onlyDIAMOND, proteome58.5cov 70.1%7.5e-99291 bits290,330–291,497 +–746128_a1163_MAT_MAT1-1BO82DRAFT_312417
SLA2conserved flankhit onlyDIAMOND, proteome89.5cov 100.0%< 1e-1801,611 bits303,413–307,275 -–746128_af293_MAT_MAT1-2BO82DRAFT_337681

Withheld candidate loci 3

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (3).

Show the 3 withheld loci

Withheld loci (3)

familylocationidiomorph genesmodelledreason
MATKZ821706:356,336–358,554MAT1-2MAT1-2-11too few of the family's genes found
MATKZ821708:24,992–25,342MAT1-2MAT1-2-11too few of the family's genes found
MATKZ821708:72,595–73,516MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
AuvarumCBS121591.genome.fasta
Assembly
172 contigs · 35.9 Mb · N50 396.1 kb
Genome SHA-256
61eeba2cecbf677ac0d028bb1adc60f5ced35d0922e02d0eac12b2dcbdce9dea
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:47:10Z
Run time
94 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits