MATPredict · mating-type report

AtubingensisCBS134.48

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:19 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KV878204MAT1-1 locus: genes from left to right on KV878204, 2,572,551 to 2,594,161: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).2,575 kb2,580 kb2,585 kb2,590 kb2,595 kb354.7 kb more to contig end →called locusCOX13: conserved flank, 2,572,551–2,573,273 (-), identity 79.4%, search hit onlyCOX13APN2: conserved flank, 2,573,792–2,575,928 (+), identity 90.9%, search hit onlyAPN2MAT1-1-1: core MAT gene, 2,578,182–2,579,339 (+), identity 51.4%, search hit onlyMAT1-1-1SLA2: conserved flank, 2,590,356–2,594,161 (-), identity 88.8%, search hit onlySLA2
Gene order on KV878204. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on KV878204, 2,571,471 to 2,595,242ASPTUDRAFT_717678 2,569,464-2,572,282 (+): hypothetical proteinASPTUDRAFT_717678ASPTUDRAFT_174406 2,572,447-2,573,292 (-): hypothetical proteinASPTUDRAFT_174406ASPTUDRAFT_44744 2,573,568-2,575,965 (+): hypothetical proteinASPTUDRAFT_44744ASPTUDRAFT_124452 2,578,182-2,579,339 (+): hypothetical proteinASPTUDRAFT_124452ASPTUDRAFT_191828 2,582,648-2,584,028 (+): hypothetical proteinASPTUDRAFT_191828ASPTUDRAFT_44747 2,584,181-2,586,030 (-): hypothetical proteinASPTUDRAFT_44747ASPTUDRAFT_123066 2,586,393-2,587,856 (+): hypothetical proteinASPTUDRAFT_123066ASPTUDRAFT_191831 2,588,318-2,589,971 (+): hypothetical proteinASPTUDRAFT_191831ASPTUDRAFT_67364 2,590,356-2,594,551 (-): hypothetical proteinASPTUDRAFT_67364ASPTUDRAFT_44751 2,594,744-2,597,414 (-): hypothetical proteinASPTUDRAFT_44751
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KV878204:2,572,551–2,594,161 · 21.6 kb
Own genes
KV878204:2,572,551–2,594,161 · 21.6 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 4 gene hits
Nearest contig end
355.8 kb
Region (samtools)
KV878204:2572551-2594161
Idiomorph scores
  • MAT1-1 329.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome79.4cov 100.0%1.8e-74211 bits2,572,551–2,573,273 -–746128_af293_MAT_MAT1-2ASPTUDRAFT_174406
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%< 1e-180897 bits2,573,792–2,575,928 +–2903220_liq80xsp_MAT_combinedASPTUDRAFT_44744
MAT1-1-1core MAThit onlyDIAMOND, proteome51.4cov 46.0%6.7e-114329 bits2,578,182–2,579,339 +–199306_rmscc1040_MAT_MAT1-1ASPTUDRAFT_124452
SLA2conserved flankhit onlyDIAMOND, proteome88.8cov 100.0%< 1e-1801,565 bits2,590,356–2,594,161 -–746128_af293_MAT_MAT1-2ASPTUDRAFT_67364

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATKV878206:905,131–911,591MAT1-2MAT1-2-11too few of the family's genes found
MATKV878187:2,335,600–2,337,989MAT1-1MAT1-1-1, MAT1-1-31too few of the family's genes found

Provenance

Genome file
AtubingensisCBS134.48.genome.fasta
Assembly
33 contigs · 35.1 Mb · N50 2.9 Mb
Genome SHA-256
1070efe80d6cd2fd742857d13abec8bc0d6271e00f58d3fd29098934344f5bdf
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:18:22Z
Run time
71 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits