AoryzaeRIB40 Aspergillus oryzae RIB40

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, Chr6_A_oryzae_RIB40:1576032-1586821

MATPredictFungiDBAPN2 (flanking_conserved) Chr6_A_oryzae_RIB40:1576032-1578187 + identity 84.1APN2MAT1-2-1 (core_MAT) Chr6_A_oryzae_RIB40:1576429-1576560 + identity 34.091MAT1-2-1MAT1-1-1 (core_MAT) Chr6_A_oryzae_RIB40:1579999-1581166 + identity 53.8MAT1-1-1SLA2 (flanking_conserved) Chr6_A_oryzae_RIB40:1582726-1586821 - identity 88.7SLA2AO090020000093 1570635-1571569 +: Ortholog of A. nidulans FGSC A4 : AN1204, AN8584, A. niger CBS 513.88 : An12g06310, Aspergillus wentii : Aspwe1_0058679, Aspwe1_0117796 and Aspergillus sydowii : Aspsy1_0038026AO090020000093AO090020000092 1571817-1574764 +: Ortholog(s) have anaphase-promoting complex localizationAO090020000092AO090020000091 1575873-1578538 +: DNA lyaseAO090020000091AO090020000089 1579742-1581706 +: Ortholog(s) have role in ascospore formationAO090020000089AO090020000087 end4 1582451-1586823 -: Actin-binding protein with a predicted role in membrane cytoskeleton assemblyAO090020000087 end4AO090020000086 1587005-1590371 -: Ortholog(s) have lipid binding activity and endoplasmic reticulum, nucleus-vacuole junction, plasma membrane, ribosome localizationAO090020000086AO090020000085 1590894-1592607 -: Ortholog(s) have di-trans,poly-cis-decaprenylcistransferase activity, trans-hexaprenyltranstransferase activity, role in ubiquinone biosynthetic process and decaprenyl diphosphate synthase complex, mitochondrion localizationAO0900200000851572 kb1574 kb1576 kb1578 kb1580 kb1582 kb1584 kb1586 kb1588 kb1590 kbChr6_A_oryzae_RIB40
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved1576032-1578187 +annotatedAO090020000091DNA lyaseAO090020000091 covers 100% of it on the same strand
MAT1-2-1core_MAT1576429-1576560 +annotatedAO090020000091DNA lyaseAO090020000091 covers 100% of it on the same strand
MAT1-1-1core_MAT1579999-1581166 +annotatedAO090020000089Ortholog(s) have role in ascospore formationAO090020000089 covers 100% of it on the same strand
SLA2flanking_conserved1582726-1586821 -annotatedAO090020000087 end4Actin-binding protein with a predicted role in membrane cytoskeleton assemblyAO090020000087 covers 100% of it on the same strand