AnigerCBS513-88 Aspergillus niger CBS 513.88

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, An11_A_niger_CBS_513_88:2442939-2474518

MATPredictFungiDBMAT1-1-1 (core_MAT) An11_A_niger_CBS_513_88:2442939-2444042 - identity 51.7MAT1-1-1APN2 (flanking_conserved) An11_A_niger_CBS_513_88:2446373-2448508 - identity 90.9APN2COX13 (flanking_conserved) An11_A_niger_CBS_513_88:2449044-2449759 + identity 77.3COX13MAT1-1-3 (core_MAT) An11_A_niger_CBS_513_88:2457532-2457624 - identity 41.935MAT1-1-3SLA2 (flanking_conserved) An11_A_niger_CBS_513_88:2471184-2474518 - identity 89.7SLA2An11g10150 2437714-2438755 -: Phosphoribosyl amino imidazolesuccinocarbozamide synthetaseAn11g10150An11g10160 2438931-2440310 -: Has domain(s) with predicted catalytic activity, metal ion binding, phosphoric diester hydrolase activityAn11g10160An11g10170 2441450-2442185 +: Ortholog of Aspergillus niger ATCC 1015 : 39471-mRNAAn11g10170An11g10180 2442939-2444042 -: Ortholog(s) have role in ascospore formationAn11g10180An11g10190 2446100-2448692 -: Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activityAn11g10190An11g10200 2448989-2449956 +: Protein with similarity to subunit VIa of cytochrome c oxidaseAn11g10200An11g10210 2450133-2452764 -: Ortholog(s) have anaphase-promoting complex localizationAn11g10210An11e10220 5S rRNA 2453090-2453208 +: rRNAAn11e10220 5S rRNAAn11g10230 2453232-2453373 -: protein of unknown functionAn11g10230An11g10240 2454044-2455883 +: Has domain(s) with predicted metal ion transmembrane transporter activity, role in metal ion transport, transmembrane transport and membrane localizationAn11g10240An11g10250 2456088-2457411 +: Has domain(s) with predicted hydrolase activityAn11g10250An11g10260 2457647-2459085 -: Ortholog(s) have acetylglucosaminyltransferase activity, role in protein N-linked glycosylation and Golgi medial cisterna localizationAn11g10260An11g10270 2460460-2461962 +: Has domain(s) with predicted aspartic-type endopeptidase activity and role in proteolysisAn11g10270An11g10280 2463007-2464398 +: Ortholog of A. niger CBS 513.88 : An08g04870, A. oryzae RIB40 : AO090103000142, Aspergillus wentii : Aspwe1_0041573 and Aspergillus versicolor : Aspve1_0086390An11g10280An11g10290 2464563-2466194 -: Has domain(s) with predicted oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor activity and role in oxidation-reduction processAn11g10290An11g10300 2466197-2468222 +: Has domain(s) with predicted catalytic activity and role in metabolic processAn11g10300An11g10310 2468675-2470381 +: Gentisate 1,2-dioxygenaseAn11g10310An11g10320 slaB 2470439-2474918 -: Predicted actin-binding protein involved in endocytosisAn11g10320 slaBAn11g10330 2474929-2478944 -: Ortholog(s) have lipid binding activity and endoplasmic reticulum, nucleus-vacuole junction, ribosome localizationAn11g103302440 kb2444 kb2448 kb2452 kb2456 kb2460 kb2464 kb2468 kb2472 kb2476 kbAn11_A_niger_CBS_513_88
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT2442939-2444042 -annotatedAn11g10180Ortholog(s) have role in ascospore formationAn11g10180 covers 100% of it on the same strand
APN2flanking_conserved2446373-2448508 -annotatedAn11g10190Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activityAn11g10190 covers 100% of it on the same strand
COX13flanking_conserved2449044-2449759 +annotatedAn11g10200Protein with similarity to subunit VIa of cytochrome c oxidaseAn11g10200 covers 100% of it on the same strand
MAT1-1-3core_MAT2457532-2457624 -novel—no FungiDB gene overlaps this MATPredict gene
SLA2flanking_conserved2471184-2474518 -annotatedAn11g10320 slaBPredicted actin-binding protein involved in endocytosisAn11g10320 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
An11g102102450133-2452764 -Ortholog(s) have anaphase-promoting complex localization
An11e10220 5S rRNA2453090-2453208 +rRNA
An11g102302453232-2453373 -protein of unknown function
An11g102402454044-2455883 +Has domain(s) with predicted metal ion transmembrane transporter activity, role in metal ion transport, transmembrane transport and membrane localization
An11g102502456088-2457411 +Has domain(s) with predicted hydrolase activity
An11g102602457647-2459085 -Ortholog(s) have acetylglucosaminyltransferase activity, role in protein N-linked glycosylation and Golgi medial cisterna localization
An11g102702460460-2461962 +Has domain(s) with predicted aspartic-type endopeptidase activity and role in proteolysis
An11g102802463007-2464398 +Ortholog of A. niger CBS 513.88 : An08g04870, A. oryzae RIB40 : AO090103000142, Aspergillus wentii : Aspwe1_0041573 and Aspergillus versicolor : Aspve1_0086390
An11g102902464563-2466194 -Has domain(s) with predicted oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor activity and role in oxidation-reduction process
An11g103002466197-2468222 +Has domain(s) with predicted catalytic activity and role in metabolic process
An11g103102468675-2470381 +Gentisate 1,2-dioxygenase