AnidulansFGSCA4 Aspergillus nidulans FGSC A4

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, ChrIII_A_nidulans_FGSC_A4:1140942-1149995

MATPredictFungiDBCOX13 (flanking_conserved) ChrIII_A_nidulans_FGSC_A4:1140942-1141641 - identity 100.0COX13APN2 (flanking_conserved) ChrIII_A_nidulans_FGSC_A4:1141955-1144058 + identity 100.0APN2MAT1-2-1 (core_MAT) ChrIII_A_nidulans_FGSC_A4:1148940-1149995 - identity 100.0MAT1-2-1AN4739 ad50 1134469-1135974 -: putative phosphoribosylaminoimidazolesuccinocarboxamide synthaseAN4739 ad50AN4738 1136309-1137918 -: Ortholog of A. fumigatus Af293 : Afu7g05020, A. niger CBS 513.88 : An04g04790, A. oryzae RIB40 : AO090026000567, Aspergillus wentii : Aspwe1_0027448 and Aspergillus sydowii : Aspsy1_0824362AN4738AN10582 1138459-1140391 -: Has domain(s) with predicted FAD binding, cytochrome-c oxidase activity, oxidoreductase activity, role in metabolic process and mitochondrial respiratory chain complex IV localizationAN10582AN10585 1140627-1141697 -: Ortholog(s) have cytochrome-c oxidase activity, enzyme regulator activity, role in aerobic respiration, mitochondrial respiratory chain supercomplex assembly and mitochondrial respiratory chain complex IV, plasma membrane localizationAN10585AN4736 1141871-1144975 +: Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activityAN4736AN4735 1144946-1147883 -: Ortholog of A. fumigatus Af293 : Afu3g06200, A. niger CBS 513.88 : An11g10210, Aspergillus wentii : Aspwe1_0060656, Aspergillus sydowii : Aspsy1_0056669 and Aspergillus terreus NIH2624 : ATET_08809AN4735AN4734 MAT2 1148276-1150126 -: HMG domain mating-type proteinAN4734 MAT2AN4733 1151054-1154789 -: Ortholog(s) have role in signal transduction and Golgi apparatus, endoplasmic reticulum, mitochondrion, plasma membrane localizationAN47331136 kb1138 kb1140 kb1142 kb1144 kb1146 kb1148 kb1150 kb1152 kb1154 kbChrIII_A_nidulans_FGSC_A4
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1140942-1141641 -annotatedAN10585Ortholog(s) have cytochrome-c oxidase activity, enzyme regulator activity, role in aerobic respiration, mitochondrial respiratory chain supercomplex assembly and mitochondrial respiratory chain complex IV, plasma membrane localizationAN10585 covers 100% of it on the same strand
APN2flanking_conserved1141955-1144058 +annotatedAN4736Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activityAN4736 covers 100% of it on the same strand
MAT1-2-1core_MAT1148940-1149995 -annotatedAN4734 MAT2HMG domain mating-type proteinAN4734 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
AN47351144946-1147883 -Ortholog of A. fumigatus Af293 : Afu3g06200, A. niger CBS 513.88 : An11g10210, Aspergillus wentii : Aspwe1_0060656, Aspergillus sydowii : Aspsy1_0056669 and Aspergillus terreus NIH2624 : ATET_08809

Ascomycota_MAT_1: MAT1-1 Ascomycota:MAT, confidence medium, ChrVI_A_nidulans_FGSC_A4:2903571-2910117

MATPredictFungiDBSLA2 (flanking_conserved) ChrVI_A_nidulans_FGSC_A4:2903571-2907134 + identity 100.0SLA2MAT1-1-1 (core_MAT) ChrVI_A_nidulans_FGSC_A4:2908976-2910117 - identity 100.0MAT1-1-1AN2757 2899446-2902894 +: Ortholog(s) have lipid binding activity and endoplasmic reticulum, nucleus-vacuole junction, plasma membrane, ribosome localizationAN2757AN2756 slaB 2903537-2907752 +: Predicted actin binding protein with similarity to Saccharomyces cerevisiae Sla2pAN2756 slaBAN2755 MAT1 2908205-2910242 -: Alpha-domain mating-type proteinAN2755 MAT1AN10335 2912424-2913822 +: Has domain(s) with predicted oxidoreductase activity and role in metabolic processAN10335AN10338 2914312-2916328 +: Ortholog(s) have L-arginine transmembrane transporter activity, L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity, moreAN103382900 kb2902 kb2904 kb2906 kb2908 kb2910 kb2912 kb2914 kbChrVI_A_nidulans_FGSC_A4
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved2903571-2907134 +annotatedAN2756 slaBPredicted actin binding protein with similarity to Saccharomyces cerevisiae Sla2pAN2756 covers 100% of it on the same strand
MAT1-1-1core_MAT2908976-2910117 -annotatedAN2755 MAT1Alpha-domain mating-type proteinAN2755 covers 100% of it on the same strand