MATPredict · mating-type report

AluchuensisCBS106.47

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:50 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KV878237MAT1-1 locus: genes from left to right on KV878237, 3,343,431 to 3,364,238: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).3,345 kb3,350 kb3,355 kb3,360 kb3,365 kb356.5 kb more to contig end →called locusCOX13: conserved flank, 3,343,431–3,344,023 (-), identity 77.2%, search hit onlyCOX13APN2: conserved flank, 3,344,579–3,346,716 (+), identity 90.9%, search hit onlyAPN2MAT1-1-1: core MAT gene, 3,348,958–3,350,115 (+), identity 51.2%, search hit onlyMAT1-1-1SLA2: conserved flank, 3,360,429–3,364,238 (-), identity 89.5%, search hit onlySLA2
Gene order on KV878237. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on KV878237, 3,342,390 to 3,365,279ASPFODRAFT_41813 3,340,029-3,343,345 (+): hypothetical proteinASPFODRAFT_41813ASPFODRAFT_41814 3,343,259-3,344,052 (-): hypothetical proteinASPFODRAFT_41814ASPFODRAFT_123916 3,344,579-3,346,716 (+): hypothetical proteinASPFODRAFT_123916ASPFODRAFT_180958 3,348,934-3,350,143 (+): hypothetical proteinASPFODRAFT_180958ASPFODRAFT_57556 3,352,726-3,354,105 (+): hypothetical proteinASPFODRAFT_57556ASPFODRAFT_41818 3,354,294-3,355,962 (-): hypothetical proteinASPFODRAFT_41818ASPFODRAFT_41819 3,356,092-3,358,072 (+): hypothetical proteinASPFODRAFT_41819ASPFODRAFT_41821 3,358,186-3,360,502 (+): hypothetical proteinASPFODRAFT_41821ASPFODRAFT_203824 3,360,429-3,364,238 (-): hypothetical proteinASPFODRAFT_203824ASPFODRAFT_41823 3,364,824-3,368,379 (-): hypothetical proteinASPFODRAFT_41823
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KV878237:3,343,431–3,364,238 · 20.8 kb
Own genes
KV878237:3,343,431–3,364,238 · 20.8 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 4 gene hits
Nearest contig end
357.6 kb
Region (samtools)
KV878237:3343431-3364238
Idiomorph scores
  • MAT1-1 336.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome77.2cov 89.7%7.9e-63181 bits3,343,431–3,344,023 -–746128_af293_MAT_MAT1-2ASPFODRAFT_41814
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%< 1e-180901 bits3,344,579–3,346,716 +–2903220_liq80xsp_MAT_combinedASPFODRAFT_123916
MAT1-1-1core MAThit onlyDIAMOND, proteome51.2cov 93.9%1.3e-116336 bits3,348,958–3,350,115 +–162425_fgsc-a4_MAT_combinedASPFODRAFT_180958
SLA2conserved flankhit onlyDIAMOND, proteome89.5cov 100.0%< 1e-1801,583 bits3,360,429–3,364,238 -–746128_af293_MAT_MAT1-2ASPFODRAFT_41821 (opposite strand)
ASPFODRAFT_203824

Withheld candidate loci 9

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (9).

Show the 9 withheld loci

Withheld loci (9)

familylocationidiomorph genesmodelledreason
MATKV878240:1,470,404–1,472,596MAT1-2MAT1-2-11too few of the family's genes found
MATKV878251:9,411–10,442MAT1-2MAT1-2-11too few of the family's genes found
MATKV878255:4,753–13,955MAT1-1MAT1-1-1, MAT1-1-31too few of the family's genes found
MATKV878255:81,164–110,370MAT1-2MAT1-1-1, MAT1-2-1, MAT1-1-32too few of the family's genes found
MATKV878255:210,697–212,957MAT1-1MAT1-1-1, MAT1-1-31too few of the family's genes found
MATKV878258:12,193–13,525MAT1-1MAT1-1-31too few of the family's genes found
MATKV878262:27,439–28,639MAT1-1MAT1-1-31too few of the family's genes found
MATKV878272:11,141–12,271MAT1-1MAT1-1-31too few of the family's genes found
MATKV878282:5,270–6,471MAT1-1MAT1-1-31too few of the family's genes found

Provenance

Genome file
AluchuensisCBS106.47.genome.fasta
Assembly
100 contigs · 37.5 Mb · N50 2.2 Mb
Genome SHA-256
00503ed2f5fa43b27b6f3ec4ae33ebe70470ff09d81438c982f6e14a141b0829
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:48:46Z
Run time
74 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits