FungiDB MATpredict
MATPredict mating-type (MAT) locus calls on FungiDB genomes, compared with the FungiDB gene annotation. Results are kept per FungiDB release; release 71 is the primary set.
Generated 2026-11-06 with MATPredict v0.8.1, gmg v0.3.2, index bfd-reps-2026.10.5-s20000.gmgi, taxonomy 2026-10-01.
Releases
| Release | Genomes run | MAT locus called | Not searched | Failed | MAT genes without annotation |
|---|---|---|---|---|---|
| release 71 | not run yet | ||||
| release 68 | 1 | 1 | 0 | 0 | 0 |
Method
Each genome is routed to a phylum by GmG (matpredict detect --phylum auto), then MATPredict locates the MAT locus and models its genes. Each modelled gene is matched to the FungiDB GFF by coordinate overlap on the same contig. Every step is a script in the repository; see its README to repeat the run.